tidyverse/ggplot2

An implementation of the Grammar of Graphics in R

tidyverse/dplyr

dplyr: A grammar of data manipulation

rdpeng/ProgrammingAssignment2

Repository for Programming Assignment 2 for R Programming on Coursera

sqjin/CellChat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

benjjneb/dada2

Accurate sample inference from amplicon data with single nucleotide resolution

chris-mcginnis-ucsf/DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

YuLab-SMU/clusterProfiler

📊 A universal enrichment tool for interpreting omics data

cailab-tamu/scTenifoldKnk

R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.

swirldev/swirl_courses

🎓 A collection of interactive courses for the swirl R package.

JGCRI/gcam-core

GCAM -- The Global Change Analysis Model

r-spatial/sf

Simple Features for R

broadinstitute/infercnv

Inferring CNV from Single-Cell RNA-Seq

jokergoo/ComplexHeatmap

Make Complex Heatmaps

stuart-lab/signac

R toolkit for the analysis of single-cell chromatin data

posit-dev/skills

A collection of Claude Skills from Posit

satijalab/seurat

R toolkit for single cell genomics

r-lib/devtools

Tools to make an R developer's life easier

rstudio/renv

renv: Project environments for R.

cole-trapnell-lab/monocle3

hadley/r4ds

R for data science: a book