satijalab/seurat

R toolkit for single cell genomics

hadley/r4ds

R for data science: a book

sqjin/CellChat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

joey711/phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

stuart-lab/signac

R toolkit for the analysis of single-cell chromatin data

rstudio/renv

renv: Project environments for R.

Rdatatable/data.table

R's data.table package extends data.frame:

broadinstitute/infercnv

Inferring CNV from Single-Cell RNA-Seq

swirldev/swirl_courses

🎓 A collection of interactive courses for the swirl R package.

chris-mcginnis-ucsf/DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

cole-trapnell-lab/monocle3

jokergoo/ComplexHeatmap

Make Complex Heatmaps

r-lib/tree-sitter-r

Tree-sitter grammar for R

rstudio/shiny

Easy interactive web applications with R

benjjneb/dada2

Accurate sample inference from amplicon data with single nucleotide resolution

nflverse/nflverse-data

Automated nflverse data repository

rdpeng/ProgrammingAssignment2

Repository for Programming Assignment 2 for R Programming on Coursera