satijalab/seurat

R toolkit for single cell genomics

swirldev/swirl_courses

🎓 A collection of interactive courses for the swirl R package.

cailab-tamu/scTenifoldKnk

R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.

chris-mcginnis-ucsf/DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

joey711/phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

kassambara/ggpubr

'ggplot2' Based Publication Ready Plots

rstudio/shiny

Easy interactive web applications with R

tidyverse/ggplot2

An implementation of the Grammar of Graphics in R

tidyverse/dplyr

dplyr: A grammar of data manipulation

posit-dev/skills

A collection of Claude Skills from Posit

prisma-flowdiagram/PRISMA2020

Produce PRISMA-2020 compliant flow diagrams

cole-trapnell-lab/monocle3

rstudio/rmarkdown

Dynamic Documents for R

rdpeng/ProgrammingAssignment2

Repository for Programming Assignment 2 for R Programming on Coursera

sqjin/CellChat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

broadinstitute/infercnv

Inferring CNV from Single-Cell RNA-Seq

hadley/r4ds

R for data science: a book

Rdatatable/data.table

R's data.table package extends data.frame: