rstudio/rmarkdown

Dynamic Documents for R

Rdatatable/data.table

R's data.table package extends data.frame:

tidyverse/ggplot2

An implementation of the Grammar of Graphics in R

satijalab/seurat

R toolkit for single cell genomics

swirldev/swirl_courses

🎓 A collection of interactive courses for the swirl R package.

hadley/r4ds

R for data science: a book

broadinstitute/infercnv

Inferring CNV from Single-Cell RNA-Seq

tidyverse/dplyr

dplyr: A grammar of data manipulation

rstudio/renv

renv: Project environments for R.

cole-trapnell-lab/monocle3

sqjin/CellChat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

YuLab-SMU/clusterProfiler

📊 A universal enrichment tool for interpreting omics data

r-spatial/sf

Simple Features for R

rstudio/shiny

Easy interactive web applications with R

chris-mcginnis-ucsf/DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

jokergoo/ComplexHeatmap

Make Complex Heatmaps

posit-dev/skills

A collection of Claude Skills from Posit

r-lib/devtools

Tools to make an R developer's life easier